J5_8V87_002
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8V87|1|1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8V87_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0741
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|G|658
8V87|1|1|G|659
8V87|1|1|A|660
8V87|1|1|G|661
8V87|1|1|U|662
8V87|1|1|C|663
*
8V87|1|1|G|799
8V87|1|1|G|800
8V87|1|1|A|801
8V87|1|1|C|802
*
8V87|1|1|G|941
8V87|1|1|U|942
8V87|1|1|U|943
8V87|1|1|C|944
*
8V87|1|1|G|1375
8V87|1|1|C|1376
*
8V87|1|1|G|1431
8V87|1|1|C|1432
8V87|1|1|A|1433
8V87|1|1|G|1434
8V87|1|1|A|1435
8V87|1|1|U|1436
8V87|1|1|C|1437
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain e
- 60S ribosomal protein L32
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
Coloring options: