J5_8V87_003
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8V87|1|1|A|715, 8V87|1|1|C|717, 8V87|1|1|U|719, 8V87|1|1|A|784, 8V87|1|1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8V87_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.2258
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8V87|1|1|C|675
8V87|1|1|G|676
8V87|1|1|A|677
8V87|1|1|G|678
*
8V87|1|1|C|702
8V87|1|1|G|703
8V87|1|1|U|704
8V87|1|1|A|705
8V87|1|1|A|706
*
8V87|1|1|U|713
8V87|1|1|G|714
8V87|1|1|A|715
8V87|1|1|A|716
8V87|1|1|C|717
8V87|1|1|G|718
8V87|1|1|U|719
8V87|1|1|A|720
8V87|1|1|G|721
*
8V87|1|1|C|749
8V87|1|1|G|750
8V87|1|1|A|751
*
8V87|1|1|U|782
8V87|1|1|A|783
8V87|1|1|A|784
8V87|1|1|G|785
8V87|1|1|A|786
8V87|1|1|G|787
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Ribosome biogenesis protein BRX1
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
Coloring options: