J5_8V9K_001

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8V9K|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8V9K_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1011

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8V9K|1|A|C|44
8V9K|1|A|G|45
8V9K|1|A|A|46
8V9K|1|A|U|47
8V9K|1|A|G|48
8V9K|1|A|A|49
8V9K|1|A|A|50
8V9K|1|A|G|51
*
8V9K|1|A|C|113
8V9K|1|A|G|114
8V9K|1|A|A|115
8V9K|1|A|A|116
8V9K|1|A|U|117
8V9K|1|A|G|118
*
8V9K|1|A|C|127
8V9K|1|A|G|128
*
8V9K|1|A|C|147
8V9K|1|A|A|148
8V9K|1|A|C|149
*
8V9K|1|A|G|175
8V9K|1|A|G|176
8V9K|1|A|G|177

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

Large ribosomal subunit protein uL23