J5_8V9K_002

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8V9K|1|A|U|318, 8V9K|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9K|1|A|C|269
8V9K|1|A|U|270
8V9K|1|A|A|271
8V9K|1|A|A|272
8V9K|1|A|A|273
8V9K|1|A|C|274
*
8V9K|1|A|G|312
8V9K|1|A|G|313
8V9K|1|A|G|314
8V9K|1|A|U|315
8V9K|1|A|U|316
8V9K|1|A|G|317
8V9K|1|A|U|318
8V9K|1|A|G|319
*
8V9K|1|A|C|457
8V9K|1|A|G|458
8V9K|1|A|A|459
8V9K|1|A|G|460
8V9K|1|A|U|461
8V9K|1|A|A|462
8V9K|1|A|G|463
*
8V9K|1|A|U|487
8V9K|1|A|G|488
8V9K|1|A|A|489
8V9K|1|A|A|490
8V9K|1|A|U|491
8V9K|1|A|C|492
8V9K|1|A|U|493
8V9K|1|A|G|494
*
8V9K|1|A|U|509
8V9K|1|A|A|510
8V9K|1|A|A|511
8V9K|1|A|G|512

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

Large ribosomal subunit protein bL28