J5_8V9L_011

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8V9L|1|a|A|105, 8V9L|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8V9L_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1117

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8V9L|1|a|C|62
8V9L|1|a|A|63
8V9L|1|a|A|64
8V9L|1|a|G|65
*
8V9L|1|a|C|102
8V9L|1|a|G|103
8V9L|1|a|A|104
8V9L|1|a|A|105
8V9L|1|a|C|106
8V9L|1|a|G|107
8V9L|1|a|G|108
8V9L|1|a|G|109
*
8V9L|1|a|C|314
8V9L|1|a|A|315
8V9L|1|a|C|316
*
8V9L|1|a|G|337
8V9L|1|a|A|338
8V9L|1|a|C|339
*
8V9L|1|a|G|350
8V9L|1|a|G|351
8V9L|1|a|C|352
8V9L|1|a|A|353
8V9L|1|a|G|354

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20