J5_8VFT_004
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8VFT|1|5|A|3908, 8VFT|1|5|A|4394, 8VFT|1|5|U|4555, 8VFT|1|5|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|A|3903
8VFT|1|5|G|3904
8VFT|1|5|A|3905
8VFT|1|5|A|3906
8VFT|1|5|G|3907
8VFT|1|5|A|3908
8VFT|1|5|C|3909
8VFT|1|5|C|3910
*
8VFT|1|5|OMG|4392
8VFT|1|5|G|4393
8VFT|1|5|A|4394
8VFT|1|5|U|4395
8VFT|1|5|A|4396
8VFT|1|5|A|4397
8VFT|1|5|C|4398
8VFT|1|5|U|4399
8VFT|1|5|G|4400
*
8VFT|1|5|C|4444
8VFT|1|5|U|4445
8VFT|1|5|U|4446
8VFT|1|5|5MC|4447
8VFT|1|5|G|4448
8VFT|1|5|A|4449
8VFT|1|5|U|4450
8VFT|1|5|G|4451
8VFT|1|5|U|4452
8VFT|1|5|C|4453
*
8VFT|1|5|G|4528
8VFT|1|5|G|4529
8VFT|1|5|UR3|4530
8VFT|1|5|U|4531
8VFT|1|5|PSU|4532
8VFT|1|5|A|4533
8VFT|1|5|G|4534
*
8VFT|1|5|PSU|4552
8VFT|1|5|A|4553
8VFT|1|5|G|4554
8VFT|1|5|U|4555
8VFT|1|5|U|4556
8VFT|1|5|U|4557
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain I
- uL16
- Chain P
- uL22
- Chain b
- eL29
Coloring options: