J5_8VFT_006

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAUU*AAUA(OMG)

Length

28 nucleotides

Bulged bases

8VFT|1|9|C|593

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|9|C|30
8VFT|1|9|U|31
8VFT|1|9|U|32
8VFT|1|9|G|33
8VFT|1|9|U|34
*
8VFT|1|9|A|521
8VFT|1|9|A|522
8VFT|1|9|A|523
8VFT|1|9|U|524
8VFT|1|9|A|525
8VFT|1|9|A|526
8VFT|1|9|C|527
*
8VFT|1|9|G|558
8VFT|1|9|G|559
8VFT|1|9|A|560
8VFT|1|9|A|561
8VFT|1|9|U|562
8VFT|1|9|G|563
*
8VFT|1|9|C|592
8VFT|1|9|C|593
8VFT|1|9|A|594
8VFT|1|9|U|595
8VFT|1|9|U|596
*
8VFT|1|9|A|640
8VFT|1|9|A|641
8VFT|1|9|U|642
8VFT|1|9|A|643
8VFT|1|9|OMG|644

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ee

eS30