J5_8VK7_004

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK7|1|A|C|694
8VK7|1|A|G|695
8VK7|1|A|A|696
8VK7|1|A|G|697
*
8VK7|1|A|C|718
8VK7|1|A|G|719
8VK7|1|A|C|720
8VK7|1|A|A|721
8VK7|1|A|G|722
*
8VK7|1|A|C|729
8VK7|1|A|G|730
8VK7|1|A|A|731
8VK7|1|A|G|732
*
8VK7|1|A|C|744
8VK7|1|A|G|745
8VK7|1|A|U|746
8VK7|1|A|A|747
8VK7|1|A|U|748
8VK7|1|A|C|749
*
8VK7|1|A|G|766
8VK7|1|A|U|767
8VK7|1|A|G|768
8VK7|1|A|U|769
8VK7|1|A|A|770
8VK7|1|A|G|771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35