J5_8VKI_006
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GCAAAAUGC*GA*UG*CAAACCAGU*AAC
- Length
- 25 nucleotides
- Bulged bases
- 8VKI|1|A|A|1975, 8VKI|1|A|G|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VKI_006 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0968
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VKI|1|A|G|1892
8VKI|1|A|C|1893
8VKI|1|A|A|1894
8VKI|1|A|A|1895
8VKI|1|A|A|1896
8VKI|1|A|A|1897
8VKI|1|A|U|1898
8VKI|1|A|G|1899
8VKI|1|A|C|1900
*
8VKI|1|A|G|1924
8VKI|1|A|A|1925
*
8VKI|1|A|U|1968
8VKI|1|A|G|1969
*
8VKI|1|A|C|1973
8VKI|1|A|A|1974
8VKI|1|A|A|1975
8VKI|1|A|A|1976
8VKI|1|A|C|1977
8VKI|1|A|C|1978
8VKI|1|A|A|1979
8VKI|1|A|G|1980
8VKI|1|A|U|1981
*
8VKI|1|A|A|2212
8VKI|1|A|A|2213
8VKI|1|A|C|2214
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
Coloring options: