J5_8VKV_001

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

8VKV|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|D|C|36
8VKV|1|D|U|37
8VKV|1|D|G|38
8VKV|1|D|G|39
*
8VKV|1|D|C|403
8VKV|1|D|G|404
8VKV|1|D|U|405
8VKV|1|D|G|406
*
8VKV|1|D|C|436
8VKV|1|D|U|437
8VKV|1|D|U|438
8VKV|1|D|U|439
8VKV|1|D|C|440
*
8VKV|1|D|G|497
8VKV|1|D|A|498
8VKV|1|D|A|499
8VKV|1|D|G|500
*
8VKV|1|D|C|545
8VKV|1|D|A|546
8VKV|1|D|A|547
8VKV|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12