J5_8VKV_003

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8VKV|1|D|A|109, 8VKV|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|D|C|58
8VKV|1|D|A|59
8VKV|1|D|A|60
8VKV|1|D|G|61
*
8VKV|1|D|C|106
8VKV|1|D|G|107
8VKV|1|D|G|108
8VKV|1|D|A|109
8VKV|1|D|C|110
8VKV|1|D|G|111
8VKV|1|D|G|112
8VKV|1|D|G|113
*
8VKV|1|D|C|314
8VKV|1|D|A|315
8VKV|1|D|C|316
*
8VKV|1|D|G|337
8VKV|1|D|A|338
8VKV|1|D|C|339
*
8VKV|1|D|G|350
8VKV|1|D|G|351
8VKV|1|D|C|352
8VKV|1|D|A|353
8VKV|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14