J5_8VL1_006

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8VL1|1|a|U|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|C|584
8VL1|1|a|G|585
8VL1|1|a|A|586
8VL1|1|a|C|587
8VL1|1|a|U|588
8VL1|1|a|U|589
*
8VL1|1|a|A|668
8VL1|1|a|G|669
8VL1|1|a|A|670
8VL1|1|a|C|671
*
8VL1|1|a|G|809
8VL1|1|a|U|810
8VL1|1|a|U|811
8VL1|1|a|C|812
*
8VL1|1|a|G|1195
8VL1|1|a|C|1196
*
8VL1|1|a|G|1250
8VL1|1|a|C|1251
8VL1|1|a|G|1252
8VL1|1|a|A|1253
8VL1|1|a|A|1254
8VL1|1|a|U|1255
8VL1|1|a|G|1256

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain l

50S ribosomal protein L4

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20