J5_8VOO_004

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8VOO|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOO|1|a|C|47
8VOO|1|a|G|48
8VOO|1|a|A|49
8VOO|1|a|U|50
8VOO|1|a|G|51
8VOO|1|a|A|52
8VOO|1|a|A|53
8VOO|1|a|G|54
*
8VOO|1|a|C|116
8VOO|1|a|G|117
8VOO|1|a|A|118
8VOO|1|a|A|119
8VOO|1|a|U|120
8VOO|1|a|G|121
*
8VOO|1|a|C|130
8VOO|1|a|A|131
*
8VOO|1|a|U|148
8VOO|1|a|A|149
8VOO|1|a|U|150
*
8VOO|1|a|A|176
8VOO|1|a|G|177
8VOO|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34