J5_8VOP_002

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

8VOP|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|C|36
8VOP|1|D|U|37
8VOP|1|D|G|38
8VOP|1|D|G|39
*
8VOP|1|D|C|403
8VOP|1|D|G|404
8VOP|1|D|U|405
8VOP|1|D|G|406
*
8VOP|1|D|C|436
8VOP|1|D|U|437
8VOP|1|D|U|438
8VOP|1|D|U|439
8VOP|1|D|C|440
8VOP|1|D|A|441
8VOP|1|D|G|442
*
8VOP|1|D|C|492
8VOP|1|D|A|493
8VOP|1|D|G|494
8VOP|1|D|A|495
8VOP|1|D|A|496
8VOP|1|D|G|497
8VOP|1|D|A|498
8VOP|1|D|A|499
8VOP|1|D|G|500
*
8VOP|1|D|C|545
8VOP|1|D|A|546
8VOP|1|D|A|547
8VOP|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12