J5_8VOP_003

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8VOP|1|D|A|109, 8VOP|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|C|58
8VOP|1|D|A|59
8VOP|1|D|A|60
8VOP|1|D|G|61
*
8VOP|1|D|C|106
8VOP|1|D|G|107
8VOP|1|D|G|108
8VOP|1|D|A|109
8VOP|1|D|C|110
8VOP|1|D|G|111
8VOP|1|D|G|112
8VOP|1|D|G|113
*
8VOP|1|D|C|314
8VOP|1|D|A|315
8VOP|1|D|C|316
*
8VOP|1|D|G|337
8VOP|1|D|A|338
8VOP|1|D|C|339
*
8VOP|1|D|G|350
8VOP|1|D|G|351
8VOP|1|D|C|352
8VOP|1|D|A|353
8VOP|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14