J5_8VOP_007

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8VOP|1|a|U|1758, 8VOP|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|G|1674
8VOP|1|a|C|1675
8VOP|1|a|A|1676
8VOP|1|a|A|1677
8VOP|1|a|A|1678
8VOP|1|a|A|1679
8VOP|1|a|U|1680
8VOP|1|a|G|1681
8VOP|1|a|G|1682
*
8VOP|1|a|C|1706
8VOP|1|a|G|1707
*
8VOP|1|a|U|1751
8VOP|1|a|C|1752
*
8VOP|1|a|G|1756
8VOP|1|a|A|1757
8VOP|1|a|U|1758
8VOP|1|a|A|1759
8VOP|1|a|C|1760
8VOP|1|a|C|1761
8VOP|1|a|A|1762
8VOP|1|a|G|1763
8VOP|1|a|C|1764
*
8VOP|1|a|G|1988
8VOP|1|a|G|1989
8VOP|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19