3D structure

PDB id
8VOQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.3 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
8VOQ|1|a|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VOQ|1|a|C|584
8VOQ|1|a|G|585
8VOQ|1|a|A|586
8VOQ|1|a|C|587
8VOQ|1|a|U|588
8VOQ|1|a|U|589
*
8VOQ|1|a|A|668
8VOQ|1|a|G|669
8VOQ|1|a|A|670
8VOQ|1|a|C|671
*
8VOQ|1|a|G|809
8VOQ|1|a|U|810
8VOQ|1|a|U|811
8VOQ|1|a|C|812
*
8VOQ|1|a|G|1195
8VOQ|1|a|C|1196
*
8VOQ|1|a|G|1250
8VOQ|1|a|C|1251
8VOQ|1|a|G|1252
8VOQ|1|a|A|1253
8VOQ|1|a|A|1254
8VOQ|1|a|U|1255
8VOQ|1|a|G|1256

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
Ribosomal protein L21
Chain l
50S ribosomal protein L4
Chain o
50S ribosomal protein L35
Chain u
50S ribosomal protein L15
Chain z
50S ribosomal protein L20

Coloring options:

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