J5_8VOR_003

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8VOR|1|D|A|109, 8VOR|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|D|C|58
8VOR|1|D|A|59
8VOR|1|D|A|60
8VOR|1|D|G|61
*
8VOR|1|D|C|106
8VOR|1|D|G|107
8VOR|1|D|G|108
8VOR|1|D|A|109
8VOR|1|D|C|110
8VOR|1|D|G|111
8VOR|1|D|G|112
8VOR|1|D|G|113
*
8VOR|1|D|C|314
8VOR|1|D|A|315
8VOR|1|D|C|316
*
8VOR|1|D|G|337
8VOR|1|D|A|338
8VOR|1|D|C|339
*
8VOR|1|D|G|350
8VOR|1|D|G|351
8VOR|1|D|C|352
8VOR|1|D|A|353
8VOR|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14