J5_8VPK_007
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8VPK|1|A|C|2299, 8VPK|1|A|G|2652, 8VPK|1|A|G|2653, 8VPK|1|A|A|2654, 8VPK|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VPK_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.1463
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VPK|1|A|U|2297
8VPK|1|A|U|2298
8VPK|1|A|C|2299
8VPK|1|A|A|2300
*
8VPK|1|A|U|2467
8VPK|1|A|U|2468
8VPK|1|A|U|2469
8VPK|1|A|A|2470
*
8VPK|1|A|U|2482
8VPK|1|A|G|2483
*
8VPK|1|A|C|2505
8VPK|1|A|G|2506
*
8VPK|1|A|C|2651
8VPK|1|A|G|2652
8VPK|1|A|G|2653
8VPK|1|A|A|2654
8VPK|1|A|U|2655
8VPK|1|A|A|2656
8VPK|1|A|A|2657
8VPK|1|A|A|2658
8VPK|1|A|A|2659
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S Ribosomal Protein L28
- Chain c
- 50S Ribosomal Protein L33
- Chain e
- 50S ribosomal protein L35
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