J5_8VR4_001

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8VR4|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VR4_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0635

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VR4|1|A|C|44
8VR4|1|A|G|45
8VR4|1|A|A|46
8VR4|1|A|U|47
8VR4|1|A|G|48
8VR4|1|A|A|49
8VR4|1|A|A|50
8VR4|1|A|G|51
*
8VR4|1|A|C|113
8VR4|1|A|G|114
8VR4|1|A|A|115
8VR4|1|A|A|116
8VR4|1|A|U|117
8VR4|1|A|G|118
*
8VR4|1|A|C|127
8VR4|1|A|G|128
*
8VR4|1|A|C|147
8VR4|1|A|A|148
8VR4|1|A|C|149
*
8VR4|1|A|G|175
8VR4|1|A|G|176
8VR4|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34