J5_8VS9_003

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAAG*CGGACGGG*CAC*GAC*GGCAGC

Length

25 nucleotides

Bulged bases

8VS9|1|16S|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|16S|G|57
8VS9|1|16S|C|58
8VS9|1|16S|A|59
8VS9|1|16S|A|60
8VS9|1|16S|G|61
*
8VS9|1|16S|C|106
8VS9|1|16S|G|107
8VS9|1|16S|G|108
8VS9|1|16S|A|109
8VS9|1|16S|C|110
8VS9|1|16S|G|111
8VS9|1|16S|G|112
8VS9|1|16S|G|113
*
8VS9|1|16S|C|314
8VS9|1|16S|A|315
8VS9|1|16S|C|316
*
8VS9|1|16S|G|337
8VS9|1|16S|A|338
8VS9|1|16S|C|339
*
8VS9|1|16S|G|350
8VS9|1|16S|G|351
8VS9|1|16S|C|352
8VS9|1|16S|A|353
8VS9|1|16S|G|354
8VS9|1|16S|C|355

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain L14

50S ribosomal protein L14

Chain L19

50S ribosomal protein L19

Chain S16

30S ribosomal protein S16

Chain S20

30S ribosomal protein S20