J5_8VSA_005
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8VSA|1|23S|A|532, 8VSA|1|23S|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VSA_005 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0733
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VSA|1|23S|C|531
8VSA|1|23S|A|532
8VSA|1|23S|G|533
*
8VSA|1|23S|C|560
8VSA|1|23S|G|561
8VSA|1|23S|U|562
8VSA|1|23S|A|563
8VSA|1|23S|C|564
*
8VSA|1|23S|G|577
8VSA|1|23S|G|578
8VSA|1|23S|G|579
*
8VSA|1|23S|C|1261
8VSA|1|23S|A|1262
*
8VSA|1|23S|U|2017
8VSA|1|23S|G|2018
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L20
- 50S ribosomal protein L20
- Chain L21
- Ribosomal protein L21
- Chain L22
- 50S ribosomal protein L22
- Chain L32
- 50S ribosomal protein L32
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