J5_8VSA_008
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 8VSA|1|23S|U|1758, 8VSA|1|23S|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VSA_008 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0899
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VSA|1|23S|G|1674
8VSA|1|23S|C|1675
8VSA|1|23S|A|1676
8VSA|1|23S|A|1677
8VSA|1|23S|A|1678
8VSA|1|23S|A|1679
8VSA|1|23S|U|1680
8VSA|1|23S|G|1681
8VSA|1|23S|G|1682
*
8VSA|1|23S|C|1706
8VSA|1|23S|G|1707
*
8VSA|1|23S|U|1751
8VSA|1|23S|C|1752
*
8VSA|1|23S|G|1756
8VSA|1|23S|A|1757
8VSA|1|23S|U|1758
8VSA|1|23S|A|1759
8VSA|1|23S|C|1760
8VSA|1|23S|C|1761
8VSA|1|23S|A|1762
8VSA|1|23S|G|1763
8VSA|1|23S|C|1764
*
8VSA|1|23S|G|1988
8VSA|1|23S|G|1989
8VSA|1|23S|C|1990
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain 16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain L03
- 50S ribosomal protein L3
- Chain L14
- 50S ribosomal protein L14
- Chain L19
- 50S ribosomal protein L19
Coloring options: