J5_8VTU_001

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8VTU|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VTU_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0553

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VTU|1|1A|C|47
8VTU|1|1A|G|48
8VTU|1|1A|A|49
8VTU|1|1A|U|50
8VTU|1|1A|G|51
8VTU|1|1A|A|52
8VTU|1|1A|A|53
8VTU|1|1A|G|54
*
8VTU|1|1A|C|116
8VTU|1|1A|G|117
8VTU|1|1A|A|118
8VTU|1|1A|A|119
8VTU|1|1A|U|120
8VTU|1|1A|G|121
*
8VTU|1|1A|C|130
8VTU|1|1A|G|131
*
8VTU|1|1A|C|148
8VTU|1|1A|A|149
8VTU|1|1A|C|150
*
8VTU|1|1A|G|176
8VTU|1|1A|G|177
8VTU|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23