J5_8VTU_018

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VTU_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0667

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8VTU|1|2a|C|36
8VTU|1|2a|U|37
8VTU|1|2a|G|38
8VTU|1|2a|G|39
*
8VTU|1|2a|C|403
8VTU|1|2a|U|404
8VTU|1|2a|U|405
8VTU|1|2a|G|406
*
8VTU|1|2a|C|436
8VTU|1|2a|U|437
8VTU|1|2a|G|438
8VTU|1|2a|A|439
8VTU|1|2a|A|441
8VTU|1|2a|C|442
*
8VTU|1|2a|G|492
8VTU|1|2a|G|493
8VTU|1|2a|U|494
8VTU|1|2a|A|495
8VTU|1|2a|A|496
8VTU|1|2a|U|498
8VTU|1|2a|A|499
8VTU|1|2a|G|500
*
8VTU|1|2a|C|545
8VTU|1|2a|G|546
8VTU|1|2a|A|547
8VTU|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12