J5_8VTV_015

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

8VTV|1|2A|G|1758, 8VTV|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VTV_015 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.0734

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8VTV|1|2A|G|1674
8VTV|1|2A|C|1675
8VTV|1|2A|A|1676
8VTV|1|2A|A|1677
8VTV|1|2A|G|1678
8VTV|1|2A|U|1679
8VTV|1|2A|U|1680
8VTV|1|2A|G|1681
8VTV|1|2A|G|1682
*
8VTV|1|2A|U|1706
8VTV|1|2A|G|1707
*
8VTV|1|2A|C|1751
8VTV|1|2A|C|1752
*
8VTV|1|2A|G|1756
8VTV|1|2A|U|1757
8VTV|1|2A|G|1758
8VTV|1|2A|A|1759
8VTV|1|2A|A|1760
8VTV|1|2A|C|1761
8VTV|1|2A|A|1762
8VTV|1|2A|G|1763
8VTV|1|2A|G|1764
*
8VTV|1|2A|C|1988
8VTV|1|2A|G|1989
8VTV|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA