J5_8VVP_001
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8VVP|1|YA|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VVP_001 not in the Motif Atlas
- Homologous match to J5_8GLP_001
- Geometric discrepancy: 0.0526
- The information below is about J5_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.3
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8VVP|1|WA|G|19
8VVP|1|WA|U|20
8VVP|1|WA|G|21
*
8VVP|1|YA|C|35
8VVP|1|YA|G|36
8VVP|1|YA|A|37
8VVP|1|YA|U|38
8VVP|1|YA|G|39
8VVP|1|YA|A|40
8VVP|1|YA|A|41
8VVP|1|YA|G|42
*
8VVP|1|YA|C|101
8VVP|1|YA|G|102
8VVP|1|YA|A|103
8VVP|1|YA|A|104
8VVP|1|YA|C|105
8VVP|1|YA|G|106
*
8VVP|1|YA|C|113
8VVP|1|YA|G|114
*
8VVP|1|YA|U|136
8VVP|1|YA|A|137
8VVP|1|YA|C|138
Current chains
- Chain WA
- 28S rRNA
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain GA
- L35
- Chain IA
- L37
- Chain KA
- eL39
- Chain M
- L15
- Chain W
- uL23
Coloring options: