3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
GUG*CGAUGAAG*CGAACG*CG*UAC
Length
22 nucleotides
Bulged bases
8GLP|1|L8|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8GLP_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.097
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8GLP|1|L5|G|19
8GLP|1|L5|U|20
8GLP|1|L5|G|21
*
8GLP|1|L8|C|35
8GLP|1|L8|G|36
8GLP|1|L8|A|37
8GLP|1|L8|U|38
8GLP|1|L8|G|39
8GLP|1|L8|A|40
8GLP|1|L8|A|41
8GLP|1|L8|G|42
*
8GLP|1|L8|C|101
8GLP|1|L8|G|102
8GLP|1|L8|A|103
8GLP|1|L8|A|104
8GLP|1|L8|C|105
8GLP|1|L8|G|106
*
8GLP|1|L8|C|113
8GLP|1|L8|G|114
*
8GLP|1|L8|U|136
8GLP|1|L8|A|137
8GLP|1|L8|C|138

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LN
60S ribosomal protein L15
Chain LX
60S ribosomal protein L23a
Chain Lh
60S ribosomal protein L35
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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