J5_8VVQ_002
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8VVQ|1|WA|C|2291, 8VVQ|1|WA|U|2352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VVQ_002 not in the Motif Atlas
- Homologous match to J5_8GLP_002
- Geometric discrepancy: 0.0404
- The information below is about J5_8GLP_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.4
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8VVQ|1|WA|G|1337
8VVQ|1|WA|G|1338
8VVQ|1|WA|A|1339
8VVQ|1|WA|G|1340
8VVQ|1|WA|U|1341
8VVQ|1|WA|C|1342
*
8VVQ|1|WA|G|1518
8VVQ|1|WA|G|1519
8VVQ|1|WA|A|1520
8VVQ|1|WA|C|1521
*
8VVQ|1|WA|G|1660
8VVQ|1|WA|U|1661
8VVQ|1|WA|U|1662
8VVQ|1|WA|C|1663
*
8VVQ|1|WA|G|2290
8VVQ|1|WA|C|2291
8VVQ|1|WA|C|2292
*
8VVQ|1|WA|G|2347
8VVQ|1|WA|C|2348
8VVQ|1|WA|A|2349
8VVQ|1|WA|G|2350
8VVQ|1|WA|A|2351
8VVQ|1|WA|U|2352
8VVQ|1|WA|C|2353
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain DA
- L32
- Chain K
- eL13
- Chain M
- L15
- Chain PA
- L28
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Z
- L27A
Coloring options: