J5_8VVQ_007

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|ZA|C|30
8VVQ|1|ZA|U|31
8VVQ|1|ZA|U|32
8VVQ|1|ZA|G|33
8VVQ|1|ZA|U|34
*
8VVQ|1|ZA|A|521
8VVQ|1|ZA|A|522
8VVQ|1|ZA|A|523
8VVQ|1|ZA|U|524
8VVQ|1|ZA|A|525
8VVQ|1|ZA|A|526
8VVQ|1|ZA|C|527
*
8VVQ|1|ZA|G|558
8VVQ|1|ZA|G|559
8VVQ|1|ZA|A|560
8VVQ|1|ZA|A|561
8VVQ|1|ZA|U|562
8VVQ|1|ZA|G|563
8VVQ|1|ZA|A|564
8VVQ|1|ZA|G|565
*
8VVQ|1|ZA|C|585
8VVQ|1|ZA|G|586
8VVQ|1|ZA|A|587
8VVQ|1|ZA|G|588
8VVQ|1|ZA|G|589
8VVQ|1|ZA|A|590
8VVQ|1|ZA|U|591
8VVQ|1|ZA|C|592
8VVQ|1|ZA|C|593
8VVQ|1|ZA|A|594
8VVQ|1|ZA|U|595
*
8VVQ|1|ZA|A|641
8VVQ|1|ZA|U|642
8VVQ|1|ZA|A|643
8VVQ|1|ZA|G|644

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9

Chain XB

S23