J5_8VVT_002
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8VVT|1|WA|C|2294, 8VVT|1|WA|U|2355
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVT|1|WA|G|1341
8VVT|1|WA|G|1342
8VVT|1|WA|A|1343
8VVT|1|WA|G|1344
8VVT|1|WA|U|1345
8VVT|1|WA|C|1346
*
8VVT|1|WA|G|1521
8VVT|1|WA|2MG|1522
8VVT|1|WA|A|1523
8VVT|1|WA|C|1524
*
8VVT|1|WA|G|1663
8VVT|1|WA|I4U|1664
8VVT|1|WA|U|1665
8VVT|1|WA|C|1666
*
8VVT|1|WA|G|2293
8VVT|1|WA|C|2294
8VVT|1|WA|C|2295
*
8VVT|1|WA|G|2350
8VVT|1|WA|C|2351
8VVT|1|WA|A|2352
8VVT|1|WA|G|2353
8VVT|1|WA|A|2354
8VVT|1|WA|U|2355
8VVT|1|WA|C|2356
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain DA
- eL32
- Chain K
- eL13
- Chain M
- L15
- Chain PA
- eL28
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Z
- uL15
Coloring options: