J5_8VVT_003
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8VVT|1|WA|G|3625, 8VVT|1|WA|G|3630
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVT|1|WA|G|2860
8VVT|1|WA|C|2861
8VVT|1|WA|A|2862
8VVT|1|WA|A|2863
8VVT|1|WA|G|2864
8VVT|1|WA|C|2865
8VVT|1|WA|OMC|2866
8VVT|1|WA|G|2867
8VVT|1|WA|G|2868
*
8VVT|1|WA|U|2892
8VVT|1|WA|G|2893
*
8VVT|1|WA|U|3618
8VVT|1|WA|G|3619
*
8VVT|1|WA|C|3623
8VVT|1|WA|G|3624
8VVT|1|WA|G|3625
8VVT|1|WA|A|3626
8VVT|1|WA|C|3627
8VVT|1|WA|C|3628
8VVT|1|WA|A|3629
8VVT|1|WA|G|3630
8VVT|1|WA|G|3631
*
8VVT|1|WA|C|3840
8VVT|1|WA|A|3841
8VVT|1|WA|C|3842
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain Q
- eL19
- Chain U
- L23
- Chain V
- L24
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: