J5_8VVT_004
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8VVT|1|WA|A|3913, 8VVT|1|WA|A|4399, 8VVT|1|WA|U|4457, 8VVT|1|WA|PSU|4536, 8VVT|1|WA|U|4560
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVT|1|WA|A|3908
8VVT|1|WA|G|3909
8VVT|1|WA|A|3910
8VVT|1|WA|A|3911
8VVT|1|WA|G|3912
8VVT|1|WA|A|3913
8VVT|1|WA|OMC|3914
8VVT|1|WA|C|3915
*
8VVT|1|WA|G|4397
8VVT|1|WA|G|4398
8VVT|1|WA|A|4399
8VVT|1|WA|U|4400
8VVT|1|WA|A|4401
8VVT|1|WA|A|4402
8VVT|1|WA|C|4403
8VVT|1|WA|U|4404
8VVT|1|WA|G|4405
*
8VVT|1|WA|C|4449
8VVT|1|WA|U|4450
8VVT|1|WA|U|4451
8VVT|1|WA|5MC|4452
8VVT|1|WA|G|4453
8VVT|1|WA|A|4454
8VVT|1|WA|PSU|4455
8VVT|1|WA|G|4456
8VVT|1|WA|U|4457
8VVT|1|WA|C|4458
*
8VVT|1|WA|G|4533
8VVT|1|WA|B8W|4534
8VVT|1|WA|UR3|4535
8VVT|1|WA|PSU|4536
8VVT|1|WA|U|4537
8VVT|1|WA|A|4538
8VVT|1|WA|G|4539
*
8VVT|1|WA|U|4557
8VVT|1|WA|A|4558
8VVT|1|WA|G|4559
8VVT|1|WA|U|4560
8VVT|1|WA|U|4561
8VVT|1|WA|U|4562
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain AA
- eL29
- Chain B
- uL3
- Chain C
- uL4
- Chain O
- uL22
- Chain Z
- uL15
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