J5_8VVT_007

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|ZA|C|30
8VVT|1|ZA|U|31
8VVT|1|ZA|U|32
8VVT|1|ZA|G|33
8VVT|1|ZA|U|34
*
8VVT|1|ZA|A|521
8VVT|1|ZA|A|522
8VVT|1|ZA|A|523
8VVT|1|ZA|U|524
8VVT|1|ZA|A|525
8VVT|1|ZA|A|526
8VVT|1|ZA|C|527
*
8VVT|1|ZA|G|558
8VVT|1|ZA|G|559
8VVT|1|ZA|A|560
8VVT|1|ZA|A|561
8VVT|1|ZA|U|562
8VVT|1|ZA|G|563
8VVT|1|ZA|A|564
8VVT|1|ZA|G|565
*
8VVT|1|ZA|C|585
8VVT|1|ZA|G|586
8VVT|1|ZA|A|587
8VVT|1|ZA|G|588
8VVT|1|ZA|G|589
8VVT|1|ZA|A|590
8VVT|1|ZA|U|591
8VVT|1|ZA|C|592
8VVT|1|ZA|C|593
8VVT|1|ZA|A|594
8VVT|1|ZA|U|595
*
8VVT|1|ZA|A|641
8VVT|1|ZA|U|642
8VVT|1|ZA|A|643
8VVT|1|ZA|G|644

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9

Chain XB

uS12

Chain v

eukaryotic elongation factor 2