J5_8VVU_009

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGCUC*GGGC*GUG*CCG*CGACC

Length

22 nucleotides

Bulged bases

8VVU|1|ZA|G|126, 8VVU|1|ZA|C|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|ZA|G|123
8VVU|1|ZA|U|124
8VVU|1|ZA|C|125
8VVU|1|ZA|G|126
8VVU|1|ZA|C|127
8VVU|1|ZA|U|128
8VVU|1|ZA|C|129
*
8VVU|1|ZA|G|183
8VVU|1|ZA|G|184
8VVU|1|ZA|G|185
8VVU|1|ZA|C|186
*
8VVU|1|ZA|G|213
8VVU|1|ZA|U|214
8VVU|1|ZA|G|215
*
8VVU|1|ZA|C|310
8VVU|1|ZA|C|311
8VVU|1|ZA|G|312
*
8VVU|1|ZA|C|337
8VVU|1|ZA|G|338
8VVU|1|ZA|A|339
8VVU|1|ZA|C|340
8VVU|1|ZA|C|341

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain GB

eS6

Chain IB

S8