J5_8VVV_001

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CGAUGAAG*CGAACG*CG*UA

Length

20 nucleotides

Bulged bases

8VVV|1|8|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|U|20
8VVV|1|5|G|21
*
8VVV|1|8|C|35
8VVV|1|8|G|36
8VVV|1|8|A|37
8VVV|1|8|U|38
8VVV|1|8|G|39
8VVV|1|8|A|40
8VVV|1|8|A|41
8VVV|1|8|G|42
*
8VVV|1|8|C|101
8VVV|1|8|G|102
8VVV|1|8|A|103
8VVV|1|8|A|104
8VVV|1|8|C|105
8VVV|1|8|G|106
*
8VVV|1|8|C|113
8VVV|1|8|G|114
*
8VVV|1|8|U|136
8VVV|1|8|A|137

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain N

eL15

Chain X

uL23

Chain h

uL29

Chain j

eL37

Chain l

eL39