J5_8VVV_002
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8VVV|1|5|C|2295, 8VVV|1|5|U|2356
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|G|1341
8VVV|1|5|G|1342
8VVV|1|5|A|1343
8VVV|1|5|G|1344
8VVV|1|5|U|1345
8VVV|1|5|C|1346
*
8VVV|1|5|G|1522
8VVV|1|5|2MG|1523
8VVV|1|5|A|1524
8VVV|1|5|C|1525
*
8VVV|1|5|G|1664
8VVV|1|5|I4U|1665
8VVV|1|5|U|1666
8VVV|1|5|C|1667
*
8VVV|1|5|G|2294
8VVV|1|5|C|2295
8VVV|1|5|C|2296
*
8VVV|1|5|G|2351
8VVV|1|5|C|2352
8VVV|1|5|A|2353
8VVV|1|5|G|2354
8VVV|1|5|A|2355
8VVV|1|5|U|2356
8VVV|1|5|C|2357
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
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