J5_8VVV_003
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8VVV|1|5|G|3626, 8VVV|1|5|G|3631
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|G|2861
8VVV|1|5|C|2862
8VVV|1|5|A|2863
8VVV|1|5|A|2864
8VVV|1|5|G|2865
8VVV|1|5|C|2866
8VVV|1|5|OMC|2867
8VVV|1|5|G|2868
8VVV|1|5|G|2869
*
8VVV|1|5|U|2893
8VVV|1|5|G|2894
*
8VVV|1|5|U|3619
8VVV|1|5|G|3620
*
8VVV|1|5|C|3624
8VVV|1|5|G|3625
8VVV|1|5|G|3626
8VVV|1|5|A|3627
8VVV|1|5|C|3628
8VVV|1|5|C|3629
8VVV|1|5|A|3630
8VVV|1|5|G|3631
8VVV|1|5|G|3632
*
8VVV|1|5|C|3841
8VVV|1|5|A|3842
8VVV|1|5|C|3843
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- eL19
- Chain V
- L23
- Chain W
- uL24
Coloring options: