J5_8VVV_004
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8VVV|1|5|A|3914, 8VVV|1|5|A|4400, 8VVV|1|5|U|4401, 8VVV|1|5|PSU|4456, 8VVV|1|5|G|4457, 8VVV|1|5|U|4561, 8VVV|1|5|U|4562
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|A|3909
8VVV|1|5|G|3910
8VVV|1|5|A|3911
8VVV|1|5|A|3912
8VVV|1|5|G|3913
8VVV|1|5|A|3914
8VVV|1|5|OMC|3915
8VVV|1|5|C|3916
*
8VVV|1|5|G|4398
8VVV|1|5|G|4399
8VVV|1|5|A|4400
8VVV|1|5|U|4401
8VVV|1|5|A|4402
8VVV|1|5|A|4403
8VVV|1|5|C|4404
8VVV|1|5|U|4405
8VVV|1|5|G|4406
*
8VVV|1|5|C|4450
8VVV|1|5|U|4451
8VVV|1|5|U|4452
8VVV|1|5|5MC|4453
8VVV|1|5|G|4454
8VVV|1|5|A|4455
8VVV|1|5|PSU|4456
8VVV|1|5|G|4457
8VVV|1|5|U|4458
8VVV|1|5|C|4459
*
8VVV|1|5|G|4534
8VVV|1|5|B8W|4535
8VVV|1|5|UR3|4536
8VVV|1|5|PSU|4537
8VVV|1|5|U|4538
8VVV|1|5|A|4539
8VVV|1|5|G|4540
*
8VVV|1|5|U|4558
8VVV|1|5|A|4559
8VVV|1|5|G|4560
8VVV|1|5|U|4561
8VVV|1|5|U|4562
8VVV|1|5|U|4563
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain P
- uL22
- Chain a
- uL15
- Chain b
- eL29
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