J5_8VVV_006
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 8VVV|1|9|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VVV_006 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.1049
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VVV|1|9|C|30
8VVV|1|9|U|31
8VVV|1|9|U|32
8VVV|1|9|G|33
8VVV|1|9|U|34
*
8VVV|1|9|A|521
8VVV|1|9|A|522
8VVV|1|9|A|523
8VVV|1|9|U|524
8VVV|1|9|A|525
8VVV|1|9|A|526
8VVV|1|9|C|527
*
8VVV|1|9|G|558
8VVV|1|9|G|559
8VVV|1|9|A|560
8VVV|1|9|A|561
8VVV|1|9|U|562
8VVV|1|9|G|563
*
8VVV|1|9|C|592
8VVV|1|9|C|593
8VVV|1|9|A|594
8VVV|1|9|U|595
*
8VVV|1|9|A|641
8VVV|1|9|U|642
8VVV|1|9|A|643
8VVV|1|9|G|644
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- uS4
- Chain XX
- uS12
- Chain ee
- eS30
Coloring options: