J5_8VVV_007

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

8VVV|1|9|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|9|C|30
8VVV|1|9|U|31
8VVV|1|9|U|32
8VVV|1|9|G|33
8VVV|1|9|U|34
*
8VVV|1|9|A|521
8VVV|1|9|A|522
8VVV|1|9|A|523
8VVV|1|9|U|524
8VVV|1|9|A|525
8VVV|1|9|A|526
8VVV|1|9|C|527
*
8VVV|1|9|G|558
8VVV|1|9|G|559
8VVV|1|9|A|560
8VVV|1|9|A|561
8VVV|1|9|U|562
8VVV|1|9|G|563
8VVV|1|9|A|564
8VVV|1|9|G|565
*
8VVV|1|9|C|585
8VVV|1|9|G|586
8VVV|1|9|A|587
8VVV|1|9|G|588
8VVV|1|9|G|589
8VVV|1|9|A|590
8VVV|1|9|U|591
8VVV|1|9|C|592
8VVV|1|9|C|593
8VVV|1|9|A|594
8VVV|1|9|U|595
*
8VVV|1|9|A|641
8VVV|1|9|U|642
8VVV|1|9|A|643
8VVV|1|9|G|644

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ee

eS30