J5_8VVV_008
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8VVV|1|9|U|55, 8VVV|1|9|A|92, 8VVV|1|9|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|9|C|53
8VVV|1|9|A|54
8VVV|1|9|U|55
8VVV|1|9|G|56
*
8VVV|1|9|C|89
8VVV|1|9|G|90
8VVV|1|9|A|91
8VVV|1|9|A|92
8VVV|1|9|U|93
8VVV|1|9|G|94
8VVV|1|9|G|95
8VVV|1|9|C|96
*
8VVV|1|9|G|434
8VVV|1|9|A|435
8VVV|1|9|G|436
*
8VVV|1|9|C|457
8VVV|1|9|A|458
8VVV|1|9|C|459
*
8VVV|1|9|G|470
8VVV|1|9|G|471
8VVV|1|9|C|472
8VVV|1|9|A|473
8VVV|1|9|G|474
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- eS4
- Chain GG
- eS6
- Chain II
- eS8
- Chain JJ
- uS4
- Chain V
- L23
- Chain YY
- eS24
Coloring options: