J5_8VVV_009

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8VVV|1|9|G|126, 8VVV|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|9|G|123
8VVV|1|9|U|124
8VVV|1|9|C|125
8VVV|1|9|G|126
8VVV|1|9|C|127
8VVV|1|9|U|128
8VVV|1|9|C|129
*
8VVV|1|9|G|183
8VVV|1|9|G|184
8VVV|1|9|G|185
*
8VVV|1|9|U|214
8VVV|1|9|G|215
*
8VVV|1|9|C|310
8VVV|1|9|C|311
8VVV|1|9|G|312
*
8VVV|1|9|C|337
8VVV|1|9|G|338
8VVV|1|9|A|339
8VVV|1|9|C|340
8VVV|1|9|C|341

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain II

eS8