J5_8VVV_010
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 8VVV|1|9|C|687, 8VVV|1|9|U|871, 8VVV|1|9|G|873, 8VVV|1|9|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|9|A|685
8VVV|1|9|U|686
8VVV|1|9|C|687
8VVV|1|9|U|688
8VVV|1|9|U|689
8VVV|1|9|G|690
*
8VVV|1|9|C|736
8VVV|1|9|U|743
8VVV|1|9|G|744
*
8VVV|1|9|C|797
8VVV|1|9|G|798
8VVV|1|9|U|799
8VVV|1|9|U|800
*
8VVV|1|9|A|865
8VVV|1|9|U|866
8VVV|1|9|G|867
8VVV|1|9|G|868
8VVV|1|9|A|869
8VVV|1|9|A|870
8VVV|1|9|U|871
8VVV|1|9|A|872
8VVV|1|9|G|873
8VVV|1|9|G|874
*
8VVV|1|9|C|912
8VVV|1|9|A|913
8VVV|1|9|U|914
8VVV|1|9|G|915
8VVV|1|9|A|916
8VVV|1|9|U|917
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- eS4
- Chain HH
- eS7
- Chain LL
- uS17
- Chain NN
- uS15
- Chain R
- eL19
- Chain WW
- uS8
- Chain XX
- uS12
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