J5_8WHY_002
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 8WHY|1|A|U|318, 8WHY|1|A|U|493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8WHY|1|A|C|269
8WHY|1|A|U|270
8WHY|1|A|A|271
8WHY|1|A|A|272
8WHY|1|A|A|273
8WHY|1|A|C|274
*
8WHY|1|A|G|312
8WHY|1|A|G|313
8WHY|1|A|G|314
8WHY|1|A|U|315
8WHY|1|A|U|316
8WHY|1|A|G|317
8WHY|1|A|U|318
8WHY|1|A|G|319
*
8WHY|1|A|C|457
8WHY|1|A|G|458
8WHY|1|A|A|459
8WHY|1|A|G|460
8WHY|1|A|U|461
8WHY|1|A|A|462
8WHY|1|A|G|463
*
8WHY|1|A|U|487
8WHY|1|A|G|488
8WHY|1|A|A|489
8WHY|1|A|A|490
8WHY|1|A|U|491
8WHY|1|A|C|492
8WHY|1|A|U|493
8WHY|1|A|G|494
*
8WHY|1|A|U|509
8WHY|1|A|A|510
8WHY|1|A|A|511
8WHY|1|A|G|512
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain J
- 50S ribosomal protein L9
Coloring options: