J5_8WHY_005

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WHY|1|A|C|694
8WHY|1|A|G|695
8WHY|1|A|A|696
8WHY|1|A|G|697
*
8WHY|1|A|C|718
8WHY|1|A|G|719
8WHY|1|A|C|720
8WHY|1|A|A|721
8WHY|1|A|G|722
*
8WHY|1|A|C|729
8WHY|1|A|G|730
8WHY|1|A|A|731
8WHY|1|A|G|732
*
8WHY|1|A|C|744
8WHY|1|A|G|745
8WHY|1|A|U|746
8WHY|1|A|A|747
8WHY|1|A|U|748
8WHY|1|A|C|749
*
8WHY|1|A|G|766
8WHY|1|A|U|767
8WHY|1|A|G|768
8WHY|1|A|U|769
8WHY|1|A|A|770
8WHY|1|A|G|771

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15