J5_8WHY_007
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 8WHY|1|A|A|2672, 8WHY|1|A|U|2833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8WHY|1|A|A|2281
8WHY|1|A|A|2282
8WHY|1|A|A|2283
8WHY|1|A|A|2284
8WHY|1|A|G|2285
8WHY|1|A|A|2286
8WHY|1|A|C|2287
8WHY|1|A|C|2288
*
8WHY|1|A|G|2670
8WHY|1|A|G|2671
8WHY|1|A|A|2672
8WHY|1|A|U|2673
8WHY|1|A|A|2674
8WHY|1|A|A|2675
8WHY|1|A|C|2676
8WHY|1|A|A|2677
*
8WHY|1|A|U|2724
8WHY|1|A|C|2725
8WHY|1|A|G|2726
8WHY|1|A|A|2727
8WHY|1|A|U|2728
8WHY|1|A|G|2729
8WHY|1|A|U|2730
8WHY|1|A|C|2731
*
8WHY|1|A|G|2806
8WHY|1|A|G|2807
8WHY|1|A|U|2808
8WHY|1|A|U|2809
8WHY|1|A|U|2810
8WHY|1|A|A|2811
8WHY|1|A|G|2812
*
8WHY|1|A|C|2830
8WHY|1|A|G|2831
8WHY|1|A|G|2832
8WHY|1|A|U|2833
8WHY|1|A|C|2834
8WHY|1|A|U|2835
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L2
- Chain F
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L22
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