J5_8WI7_011

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8WI7|1|a|A|105, 8WI7|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WI7_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.116

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8WI7|1|a|C|62
8WI7|1|a|A|63
8WI7|1|a|A|64
8WI7|1|a|G|65
*
8WI7|1|a|C|102
8WI7|1|a|G|103
8WI7|1|a|A|104
8WI7|1|a|A|105
8WI7|1|a|C|106
8WI7|1|a|G|107
8WI7|1|a|G|108
8WI7|1|a|G|109
*
8WI7|1|a|C|314
8WI7|1|a|A|315
8WI7|1|a|C|316
*
8WI7|1|a|G|337
8WI7|1|a|A|338
8WI7|1|a|C|339
*
8WI7|1|a|G|350
8WI7|1|a|G|351
8WI7|1|a|C|352
8WI7|1|a|A|353
8WI7|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain N

50S ribosomal protein L14

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20