J5_8WI9_003

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8WI9|1|a|A|105, 8WI9|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WI9_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.116

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WI9|1|a|C|62
8WI9|1|a|A|63
8WI9|1|a|A|64
8WI9|1|a|G|65
*
8WI9|1|a|C|102
8WI9|1|a|G|103
8WI9|1|a|A|104
8WI9|1|a|A|105
8WI9|1|a|C|106
8WI9|1|a|G|107
8WI9|1|a|G|108
8WI9|1|a|G|109
*
8WI9|1|a|C|314
8WI9|1|a|A|315
8WI9|1|a|C|316
*
8WI9|1|a|G|337
8WI9|1|a|A|338
8WI9|1|a|C|339
*
8WI9|1|a|G|350
8WI9|1|a|G|351
8WI9|1|a|C|352
8WI9|1|a|A|353
8WI9|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20