J5_8WIB_011

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8WIB|1|a|A|105, 8WIB|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WIB_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0983

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WIB|1|a|C|62
8WIB|1|a|A|63
8WIB|1|a|A|64
8WIB|1|a|G|65
*
8WIB|1|a|C|102
8WIB|1|a|G|103
8WIB|1|a|A|104
8WIB|1|a|A|105
8WIB|1|a|C|106
8WIB|1|a|G|107
8WIB|1|a|G|108
8WIB|1|a|G|109
*
8WIB|1|a|C|314
8WIB|1|a|A|315
8WIB|1|a|C|316
*
8WIB|1|a|G|337
8WIB|1|a|A|338
8WIB|1|a|C|339
*
8WIB|1|a|G|350
8WIB|1|a|G|351
8WIB|1|a|C|352
8WIB|1|a|A|353
8WIB|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain N

50S ribosomal protein L14

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20